解析ツール

 

研究にかかせない便利な解析ツールやデータベースです。開発者の皆様ありがとうございます。

Gene expression analyses
Seurat
scRNA-tools
computer programmingMonocle3
Garnett
MISO
ChIP-Atlas
JASPAR 転写モチーフのデータベース

Primer synthesis
Dr.Kazu.com
Ensembl
Primer3
UCSC Genome Browser
Nucleotide BLAST
NCBI Gene

Gene and animal information
NCBI Gene
Refseq BLAST
GeneCards
Mouse Genome Informatics
IMPC

Protein analysisalpha_fold
CLUSTALW
Expasy Translate
UniProt
PrDOS
AlphaFold

Expression database
Allen Brain Atlas
Protein Atlas
BICCN
Human Cell Atlas

Metabolome analysis
MetaboAnalyst
GGdb

Plasmid distributers
Riken BRC
Kazusa DNA Res Inst
Addgene

Experiment tool download
ApE, A plasmid Editor
Fiji
PyMol
Loupe Browser
R
RStudio

Bioinformaticsprogramming
Google Colab
Git
PyCharm
ParaView
Anaconda
ATOM

Human genetics
Polyphen-2
stethoscopeClinVar
gnoMAD
dbSNP
DisGeNET
HGMD
Orphanet